Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
HNSC rs1889303 chr10:111659454 A/T 1.93E-5 511 27.87 21.53 16.97 KM Plot
HNSC rs189197500 chr2:108446458 C/T 0 504 21.52 22.83 0.47 KM Plot
HNSC rs189615800 chr1:36250983 C/T 6.81E-14 510 21.23 32.67 3.02 KM Plot
HNSC rs1922625 chr2:99913998 A/C 2.12E-6 515 22.27 20.48 7.17 KM Plot
HNSC rs1922627 chr2:99879999 G/T 9.26E-7 513 7 20.48 22.2 KM Plot
HNSC rs1948101 chr2:99883135 G/C 9.26E-7 513 7 20.48 22.2 KM Plot
HNSC rs1990250 chr4:110770124 A/C 4.24E-5 515 16.63 24.23 21.77 KM Plot
HNSC rs199596553 chr1:36357062 CT/C 2.52E-11 514 21.27 32.67 3.73 KM Plot
HNSC rs200052757 chr1:36254534 GT/G 6.81E-14 510 21.23 32.67 3.02 KM Plot
HNSC rs200553010 chr8:10786072 AG/TG 3.73E-7 509 21.53 22.17 5.42 KM Plot
HNSC rs200724935 chr12:122349565 C/CTT 1.86E-5 506 22 23.78 14.4 KM Plot
HNSC rs200760879 chr1:36203659 TTTC/T 6.28E-14 513 21.27 32.67 3.02 KM Plot
HNSC rs2050475 chr1:26565665 C/T 1.78E-5 515 6.8 20.72 22.1 KM Plot
HNSC rs2053946 chr12:42864514 C/G 2.0E-5 510 21.77 22.58 16.87 KM Plot
HNSC rs2065561 chr13:20383543 C/T 4.43E-5 514 26.3 16.23 22.82 KM Plot